FauxFlow: Single Cell Immune Cells from Blood


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Important: There can be a lot of zero values in these data. Some noise has been added to spread out the data and make the low values look 'flow-like'. However, these zero values are really an undefined mixture of low readings and missing data (due to low-depth rna-seq coverage and/or challenges of single cell rna library preparation). Keep this in mind, and treat low values (and their population statistics) with some skepticism.

Table of correlations and anti-correlations

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Table of populations for selected genes

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Contributors: Jim Holloway, Nathan Siemers, and Broad Single Cell RNA-seq database
Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors Alexandra-ChloƩ Villani, Rahul Satija, Gary Reynolds, Siranush Sarkizova, Karthik Shekhar, James Fletcher, Morgane Griesbeck, Andrew Butler, Shiwei Zheng, Suzan Lazo, Laura Jardine, David Dixon, Emily Stephenson, Emil Nilsson, Ida Grundberg, David McDonald, Andrew Filby, Weibo Li, Philip L. De Jager, Orit Rozenblatt-Rosen, Andrew A. Lane, Muzlifah Haniffa, Aviv Regev, Nir Hacohen Science 21 April 2017 DOI: 10.1126/science.aah4573 Contact: cvillani@broadinstitute.org

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